SubtiBank SubtiBank
yqhH [2019-08-15 11:07:12]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yqhH [2019-08-15 11:07:12]

similar to SNF2 helicase
locus
BSU_24580
pI
8.38
mw
64.50 kDa
protein length
557 aa Sequence Blast
gene length
1674 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.8|Genetics/ other/ based on similarity]
  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.9|Newly identified competence genes]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    2,549,775 2,551,448

    Phenotypes of a mutant

  • poorly transformable [pubmed|28189581]

    • The protein

    Protein family

  • [SW|helicase family] (according to UniProt)
  • SNF2/RAD54 helicase family (with [protein|265490FA83D6D3F178C26C9240E3CB224513BF42|YwqA], according to UniProt)

    • Structure

  • [PDB|1Z6A] (from Sulfolobus solfataricus, 27% identity) [PDB|15882619]

    • Expression and Regulation

    Operons

    genes
    [gene|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|yqhH]-[gene|22BEB39F735DAAF71F1B382CD453A9C2D4CC9FA4|yqhG]

    sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|16497325], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]

    • regulation

  • expressed early during sporulation in the forespore ([protein|search|SigF]) [Pubmed|16497325]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C418 (yqhH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2416 NBRP B. subtilis, Japan]
  • BKE24580 ([gene|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|yqhH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE24580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCTTTGAAACCGCCTT, downstream forward: _UP4_TAGCCTGTAAGGAGGTTTTA
  • BKK24580 ([gene|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|yqhH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK24580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCTTTGAAACCGCCTT, downstream forward: _UP4_TAGCCTGTAAGGAGGTTTTA

    • References

  • 16497325,28189581,15882619